SE3220125

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8236
  • Prunus persica
  • SE3220125
  • Mutator
  • PrpM34
  • scaffold_6:26638032-26638277
  • TATCCAAAA
  • AGGATAATGCTTCCTTCTTGCCTATAAGGAGGAACTCCTCCTTGTCTGCTGATGTGACTTAGCCACAATCTGACACGTGTCTCTCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATCCAAA                 -   C                                               T       G   -  C    -----GTTAAGAATAA      -  AAAAA
        AGGATAATGCTTCCTTC TTG CTATAAGGAGGAACTCCTCCTTGTCTGCTGATGTGACTTAGCCACAA CTGACAC TGT CT TCTT                TTAAAG TG     
        ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||                |||||| ||     T
        TCCTATTACGAAGGGAG AAC GGTATTCCTCCTTGAGGAGGAATGGGTGATTACACTGAGTTGGTGTT GATTGTG ACA GA AGAA                AGTTTC AC     
AAAACCTA                 G   A                                               T       A   A  -    AATGAAAAAAAATAAG      C  GTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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