SE3230126

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8237
  • Prunus persica
  • SE3230126
  • hAT
  • Prph8
  • scaffold_4:7586905-7587418
  • GCTACAGT
  • GCTACAGTCAGTGGCGGATCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
   AC      T          GAAATTTTTTAGCG        AAATT         TGAAAAATGGTTTTTCGGAATAATCATTTTCTCAAGATAATTTTTGGCGGCTTTTATTCCTTACACATCAAATAAAAAAACTTGATTTTATGGGATTTTAGTATGAAGTATATATTGACTTAATGAGCTATCATTTTTAGCCTAAATCGTATTTTGCACTAAAAACGATTTTTCATATTTTGATTTGGTAGGAATTTGATTTTCTAG
GCT  AGTCAG GGCGGATCCA              GAGGTGCA     GATTAAGTA                                                                                                                                                                                                               
|||  |||||| ||||||||||              ||||||||     |||||||||                                                                                                                                                                                                               T
TGA  TCGGTC CCGCCTAGGT              TTCCGCGT     TCCTCCACG                                                                                                                                                                                                               
   CA      T          ------------AA        -----         TCGACGTGGAGGGAATCGTCTTTTTTGATAACATCCACGAAGTTTGACGGGTAAACGAGTTAACCACATGTCTAATGGAATAAAGGTAAAAGTTGTAAATTCATTTACAGAAACAGAAAAATGAAATTAAATAAATATATAATGAGGTAAATGAATTCAAATGTTACATTTATTCCTTCATGGGGGGTAAACCTAAGTTTATTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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