Plant MITE

SE3260128

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8239
Prunus persica
SE3260128
Mim
PrpMi1
scaffold_6:28033534-28033740
TATATATATATA
TATATATATATACAGTCCCGATCTCTTGGACCACAGGAGTCCAAGAGATTGTGGTCACCCATCGTTGGATATTAATCCAATGGTTCA

Secondary structure and sequence

TSD TIR

5'

3'

                  C            C     A            -        C           ATT   C          AAAA G    T  AAA
TATATATATATACAGTCC GATCTCTTGGAC ACAGG GTCCAAGAGATT GTGGTCAC CATCGTTGGAT   AAT CAATGGTTCA    A TTTT TA   
|||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||||| |||||||||||   ||| ||||||||||    | |||| ||   G
ATATATATATATGTCAGG CTAGAGAACCTG TGTCC CAGGTTCTCTAA CACCAGTG GTGGCAACCTA   TTA GTTGCCAAGT    T AGAA GT   
                  A            A     C            A        A           CAT   A          -GAG G    C  GAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3260128

TATATATATATACAGTCCCGATCTCTTGGACCACAGGAGTCCAAGAGATTGTGGTCACCCATCGTTGGATATTAATCCAATGGTTCAAAAAAGTTTTTTAAAAGGAGTGCAAGAGTGAGTGAACCGTTGAATTTACATCCAACGGTGAGTGACCACAAATCTCTTGGACCCCTGTAGTCCAAGAGATCAGGACTGTATATATATATA

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