SE3250130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8241
  • Prunus persica
  • SE3250130
  • PIF/harbinger
  • PrpP20
  • scaffold_3:1805710-1805976
  • TTA
  • AGGGGGGTGTATCCAATTCATACTTATAAAGACTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                    T    A   A       -------------------T  --   -      ACTTTTATAGAGATGACAAATTCTTAAATACTTTCATAGAGTTGATAAAAGTCATTAGTAAATTGGCAAGA
  AGGGGGGTGTATCCAATTCA ACTT TAA GACTTTT                    TT  AAG TGAGTG                                                                       
  |||||||||||||||||||| |||| ||| |||||||                    ||  ||| ||||||                                                                       C
  TCCCCCCACATAGGTTAAGT TGAA ATT CTGAAAA                    TC  AGA TTTTCA                                                                       
AT                    T    A   A       TATCTCAAATTTTCAAACCA  AT   T      ATTACTGAAAATTTTTCGAATAATTTACTTACTGAAAAGACATGAAAATTCCGAATAACAATTCTCGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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