SE3220131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8242
  • Prunus persica
  • SE3220131
  • Mutator
  • PrpM16
  • scaffold_1:42568899-42569376
  • TAAAAGAAA
  • AGGGTTATTCGTAGCAATGATCTCTCAACTATACTCGAAATTACATTTTGGTCACTCAACTCAAATATTAGTTGCAAAGGTCACTCAATTGGGTGTTGTGTTGCACCATTAGTCTTTACCATCAAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAGAA         C    C    A     C       C     A                                    A                                           A           A -----  T -- T    TAAAATGATGACATGACAAGCATCTCTTAGATTATTGATGGGCAAATGTGACTTTTCAATTAGGATTATTTGTAGCAATGATCCC
        AGGGTTATT GTAG AATG TCTCT AACTATA TCGAA TTACATTTTGGTCACTCAACTCAAATATTAGTTGCA AGGTCACTCAATTGGGTGTTGTGTTGCACCATTAGTCTTTACC TCAAGTTTGTG C     TT T  T TGTT                                                                                     
        ||||||||| |||| |||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |     || |  | ||||                                                                                      
        TCCCAATAA CATC TTAC AGGGA TTGATAT AGCTT AATGTGAAACCAGTGAGTTGAGTTTATAATCAACGT TCCAGTGAGTTAACCCACAACACAACGTGGTAATCAGGGATGG AGTTCAGAGAG A     AT C  T GATT                                                                                     
AAAGGAAA         A    A    C     A       A     C                                    C                                           C           - TTGCC  - CC -    ACCACGTTGTGTTGAGGATTAACTCACTGGAGATATTGATAAAAAATCTCAACTCACTGGTTTTATATTGAGACTCATATCAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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