SE3220143

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8254
  • Prunus persica
  • SE3220143
  • Mutator
  • PrpM25
  • scaffold_1:19993855-19994211
  • TAAAAAATT
  • GAGATATTTAGTCATATACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAAAAAATT     AT   G CA        --TTCTT   A    TAA      T        CA     TA      AT     AACCCAATAAATGATAGCTAGCCCTATTGAATTTAATTTTGATTATTAAATTACTTTGATTGCCTATTGAGTGTTTTGGGCCTTTTTATGAGGTTT
           GAGAT  TTA T  TATACCCA       AGC CTAA   TATAGA AAACCTTA  CCATT  ATTTCT  AAACA                                                                                                
           |||||  ||| |  ||||||||       ||| ||||   |||||| ||||||||  |||||  ||||||  |||||                                                                                                T
           CTCTA  AGT A  ATATGGGT       TCG GGTT   ATATTT TTTGGGAT  ACTTT  ACCTGA  AATCT                                                                                                
TTAAAAAATCC     --   G TA        TATATCC   -    -TA      T        AT     --      --     TTGTGTAGGTTTCGGGTAAATGTTGTATTGTTTTTCCGAAAATTGAAGAAAATTTAATGTTTTGACGGTAACTAAAGAATTTTGTTTGGGTTGGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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