SE3250145

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8256
  • Prunus persica
  • SE3250145
  • PIF/harbinger
  • PrpP21
  • scaffold_1:32825259-32825614
  • TAA
  • AGGGCCTGTTTGATAACCATTTCAATTTTAGTTTTTAGTTTTCATTTTTTGTGCTAGAGTATGAGAGGAAAATGAGAGTGAGAATTGAAGTGAGGATGAGATTGAGAGAGAGGTAGGGCTAACAAAATTGAAAACAAAATCTTGAATTTGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                                                              G         T   ----------         T  -          A        --------      TA     --------------------------   -            -AAA    TGA        AC
  AGGGCCTGTTTGATAACCATTTCAATTTTAGTTTTTAGTTTTCATTTTTTGTGCTAGAGTAT AGAGGAAAA GAG          AGTGAGAAT GA AGTGAGGATG GATTGAGA        GAGAGG  GGGCT                          AAC AAAATTGAAAAC    ATCT   ATTTGAAA  
  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||          ||||||||| || |||||||||| ||||||||        ||||||  |||||                          ||| ||||||||||||    ||||   ||||||||   
  TCCCGGGCAAACTATTGGTAAAGTTAAAATCAAAAATCAAAAGTAAAAAACACGATCTCATA TCTCCTTTT CTC          TCACTCTTA CT TCACTTCTAC CTAACTCT        CTCTCC  TCCGA                          TTG TTTTGATTTTTG    TAGA   TAAACTTT  
AA                                                              -         T   CCTCTTACCT         -  C          C        CCCTTCTA      TC     CCCTCCCTCCGCGTTTTTTTTCACTT   A            ACTA    ---        AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End