SE3220147

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8258
  • Prunus persica
  • SE3220147
  • Mutator
  • PrpM24
  • scaffold_4:9642744-9643437
  • CTCCAATAG
  • AGGAGAAATTATAGAATGGTACTGTACTACCACGTCAGCTAGTATACTTCTATTCAAAATATACCATATGTCACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
CTCCAAT                      T                 A   -                  A          C   --AAAATTTT       G    A             -----------     GCC  C        T    AAAAAACAAAAAAA     GACGCTGGAAACCAACTCCCACAACAACCCAAATCTTCCTACCTTGCACTACCAACCACCCAACCCAATCGCACAAGAGTTTTGGTTGGCCACCTGGTTAATCTAAAACAAGAACTACATAAAGAAATCACTGGAAATAACAAAAACTGATTATTTCCTTTGTGGTTTCTGTACAAATGATTATCAA
       AGGAGAAATTATAGAATGGTAC GTACTACCACGTCAGCT GTA TACTTCTATTCAAAATAT CCATATGTCA TTT          TTATAAT TTTT TTTTACGGCTGGA           CTTTT   CT TAGAATAA ATTT              CCAAA                                                                                                                                                                                           
       |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||| |||          ||||||| |||| |||||||||||||           |||||   || |||||||| ||||              |||||                                                                                                                                                                                            
       TCCTCTTTAATATCTTACTATG CATGATGGTGCAGTCGA CAT ATGAAGGTAAGTTTTATA GGTATACAGT AAA          AATATTA AAAA AAAATGTCGACCT           GAAAA   GA ATCTTATT TAAA              AAAAT                                                                                                                                                                                           
GATAACC                      T                 C   C                  C          A   AAATATTTTT       -    -             AAATTATGAAA     ATT  A        C    --------------     TAAAATTTTTCTCTTTCTTGGGTTTCTTCGGCGGCTTTTGGTGGAGGGTGGTGTTGAGTTAGGGGTAGGAACGTGAAGAAGGTGGGTTGGGTTATCAGGTACCTAATTCTTTTATTTTTAATTCTTTCGTTCGAGTAATCCCTGAGCTGTTCAAAGACATACACTACCAATAAAGAAAAACCCAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End