SE3220156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8267
  • Prunus persica
  • SE3220156
  • Mutator
  • PrpM33
  • scaffold_3:16120099-16120512
  • TAATTTTGC
  • TAATTTTGCGGGATATTTGTAGAAATGTCACCTGAACTTATACCTCAGTTTCAATTTGTCACCTTAAAGAAAAATTTAAGTGAAATGTCACCTTAAGTTTTCAAAATTTATGATTTGTCACCTGACTTTAACATCATCCAATTTTCCATCCATTTTGAAGGGTATTTTAGTCATTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    TT   C     A                            C                                                                                                                       A        A      ----------------  AAA   GTTTACATAGCTT
 TAA  TTG GGGAT TTTGTAGAAATGTCACCTGAACTTATAC TCAGTTTCAATTTGTCACCTTAAAGAAAAATTTAAGTGAAATGTCACCTTAAGTTTTCAAAATTTATGATTTGTCACCTGACTTTAACATCATCCAATTTTCCATCCATTTTGAAGGGT TTTTAGTC TTCCAA                GC   ATG             
 |||  ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||                ||   |||             T
 GTT  AAT CCCTA AAACATCTTTACAGTGGACTTGAATATG AGTCAAAGTTAAACAGTGGAATTTCTTTTTAAATTCGTTTTACAGTGGAATTCAAAAGTTTTAGGTACTAAACAGTGGACTGAAATTGTAGTAGGTTAAAAGGTAGGTAAAATTTCCCA AAAATCAG AAGGTT                AA   ATA             
C   TT   -     A                            T                                                                                                                       C        A      ATACATTTGGGAGAAA  ---   TATTAAATTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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