SE3250158

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8269
  • Prunus persica
  • SE3250158
  • PIF/harbinger
  • PrpP17
  • scaffold_4:26146676-26146912
  • TTC
  • GGGCTCGTTTGGAAGTGATTCTTGATAGGCTAGAATCACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTC            A         T    G        -     TTGG      G    TCCCACGTGTT            A    C     A            C  GA         CCC
   GGGCTCGTTTGG AGTGATTCT GATA GCTAGAAT CACTT    AAAGAA CACT           TCTCCATATAAT ACTT AAGTG TTTTAAGTGATT TG  GAGAAGCAC   
   |||||||||||| ||||||||| |||| |||||||| |||||    |||||| ||||           |||||||||||| |||| ||||| |||||||||||| ||  |||||||||   T
   CCCGAGCAAACC TCACTAAGA CTAT CGGTTTTG GTGAA    TTTCTT GTGA           AGAGGTATATTA TGAA TTCAC AAAATTCACTAA AT  CTCTTCGTG   
CTT            C         T    A        C     TATA      A    -----------            G    A     C            A  AC         TAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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