SE3250160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8271
  • Prunus persica
  • SE3250160
  • PIF/harbinger
  • PrpP22
  • scaffold_7:10435264-10435554
  • TAA
  • AGGGCTCGTTTGGGACTGCTTCTCTAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      C        C  C    CTA    ATA      CTC     T    TTCTAACAAAAGCGCTTTTATTATAAAAATTTAGAATTTTCATAAAAAAATTAAAGTGCTTCGTGAAAAAGCACTTGGGAGTGCTTCTTGAAGAA
  AGGGCT GTTTGGGA TG TTCT   GGAA   CTTTTG   ATAAG GCGC                                                                                               
  |||||| |||||||| || ||||   ||||   ||||||   ||||| ||||                                                                                               G
  TCCCGG CAAACCTT AC AAGA   CCTT   CGGTTT   TCGCG AAAG                                                                                               
AA      A        T  A    ---    -AC      ---     -    ACTATTGATTTTCGCGAAGACTGTAGAAAACCATCTTTTTAAATCTTCGCGAAGACCCAGTATCTTCGCGGAATACCTCTTCGCGGACGATACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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