SE3220161

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8272
  • Prunus persica
  • SE3220161
  • Mutator
  • PrpM40
  • scaffold_8:12661742-12661939
  • TTTCCTTTT
  • GATATTGCTTGCCTCATTCCTTGTAAGGAGATACTCCTCCTTTCTGCAAATCACAGTTTGACACATGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCCTTTTT  TAT     G    -A    T      G  ATA     CCT    -  A   C     T     --CA    AAAATAA   ATCAAAAA
          GA   TGCTT CCTC  TTCC TGTAAG AG   CTCCT   TTCT GC AAT ACAGT TGACA    TGCA       TTC        
          ||   ||||| ||||  |||| |||||| ||   |||||   |||| || ||| ||||| |||||    ||||       |||         
          CT   ATGAA GGAG  AAGG ACATTC TC   GGGGA   AAGA CG TTA TGTCA ACTGT    ACGT       AAG        
TTTTACTTTC  TTT     G    GA    T      G  CTC     TAT    A  G   T     C     ACAC    ATTCAAA   AAAAACAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End