Plant MITE

SE3250166

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8277
Prunus persica
SE3250166
PIF/harbinger
PrpP9
scaffold_2:26089900-26090240
TAA
AGAGCATCTCTAGTAAAGGTTGTAT

Secondary structure and sequence

TSD TIR

5'

3'

TA         C    AAA  T     AATG  A  -     TAAATATACACTATTTGTGATTGGAATCACCTGCAATGAAGAGGTATAAATGATTATAAATTTGCATCACAACTGTGAGATGCAAATTTAGATACACATGTACATCTTTTTTTACATCCCATGTAGGTG
  AGAGCATCT TAGT   GG TGTAT    AG TG TATGT                                                                                                                                 
  ||||||||| ||||   || |||||    || || |||||                                                                                                                                 A
  TCTCGTAGG ATCA   CC ACATA    CC CC ACATT                                                                                                                                 
AA         T    CCC  C     AAAG  -  C     TCGGTGAAAATGTAGGGGAAATGTAGAAGCTCCCAACATTTACACCAAAAAGGAGGTTATCCCTTCTACATTTAGATTTCTTCATATTAATTAAAACGAGTGAAAATAGGTGGAAAAGAGTACATCCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3250166

TAAGAGCATCTCTAGTAAAGGTTGTATAATGAGATGTATGTTAAATATACACTATTTGTGATTGGAATCACCTGCAATGAAGAGGTATAAATGATTATAAATTTGCATCACAACTGTGAGATGCAAATTTAGATACACATGTACATCTTTTTTTACATCCCATGTAGGTGAGGCCTACATGAGAAAAGGTGGATAAAAGTGAGCAAAATTAATTATACTTCTTTAGATTTACATCTTCCCTATTGGAGGAAAAACCACATTTACAACCCTCGAAGATGTAAAGGGGATGTAAAAGTGGCTTTACACCCCCGAAAATACACCCCCCACTATGGATGCTCTAA

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