SE3230170

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8281
  • Prunus persica
  • SE3230170
  • hAT
  • Prph6
  • scaffold_1:21405433-21405977
  • CTACATTC
  • TAGGGGTGGGCACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTACATTC            -   -----T    T      -------   TTTTTGCCTCAAATTGGAACCGAATTCGATATTATTTACCCGATTCGGTTAGGTCCGATTTTAACAAAAAATTATAAAACTGTCCGATTTGGGTTGAATCGGATTATTATTATTATTTTTTCAAATTATTTTTTAATACAAATTTCAAATGAAATTTTATTTTTTTGGCTTGAAAATTAACAAATTATTCAATTTCATACAAAAAGAAATATTAAGGCTAGAAAAGAG
        TAGGGGTGGGCA CGG      TTGG TTGAAC       TGA                                                                                                                                                                                                                                    
        |||||||||||| |||      |||| ||||||       |||                                                                                                                                                                                                                                    A
        ATCCCCACCCGT GCC      ACTT AGCTAG       GGT                                                                                                                                                                                                                                    
CTTACATC            A   TTGATT    -      TTGGCTT   TTGACCTGTGCTTTTTTGGCACAACTGATTTTTCAGTTTTAGTTGAGTTTTTTGACTTGACTTGGCTAAGATTGGCCTAGGGCAAAGCTAATATATGGGGTTGTTTGGCTTTGTCCGGCTTGGTTTAGACAACTTAATTTTTTATATATTAAAATTACAAATAAATTTAGGTTACGATATAAAAATTAGAGTATTGATTATAAATGGGTTCAAGTTAAAGTTTTGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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