Plant MITE

SE3430002

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8285
Populus trichocarpa
SE3430002
hAT
Hat1
scaffold_1:7392384-7392665
CATGTAAT
TGTAATCATAGTTTTGA

Secondary structure and sequence

TSD TIR

5'

3'

CA    AT         G             C  -----     GTCGACCCGGGGCTGGAACCGGGCCAGGTTGAAGAAAAAATATGGGAAGGAATAACTCGGTGTGACCCGGTTGACCCGGCAAGACTCGGTCAAAAACCTG
  TGTA  CATAGTTTT AAACCTGGCTCGG CC     GGCGG                                                                                                    
  ||||  ||||||||| ||||||||||||| ||     |||||                                                                                                     
  ATAT  GTATCAAAA TCTGGGCCGGGCC AG     GGGCC                                                                                                    
TA    AC         G             -  GTTCC     CAAGGCCCAAAACTGGCCCAGTGGCCCAGCGAGCCCAGTTAAAAAAATTTAGTTTTGCTGCAGCAAAATCATTTTTTTTGTTTTCAGTTGGCCAACGTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3430002

CATGTAATCATAGTTTTGAAACCTGGCTCGGCCCGGCGGGTCGACCCGGGGCTGGAACCGGGCCAGGTTGAAGAAAAAATATGGGAAGGAATAACTCGGTGTGACCCGGTTGACCCGGCAAGACTCGGTCAAAAACCTGGTTGCAACCGGTTGACTTTTGTTTTTTTTACTAAAACGACGTCGTTTTGATTTAAAAAAATTGACCCGAGCGACCCGGTGACCCGGTCAAAACCCGGAACCCGGGCCTTGGACCGGGCCGGGTCTGAAAACTATGCATATAAT

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