Plant MITE

SE3430005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8288
Populus trichocarpa
SE3430005
hAT
Hat3
scaffold_7:4218820-4219172
TTTTAGAG
TTTAGAGCAGAGTTTTTAAACCCGGCCTGGT

Secondary structure and sequence

TSD TIR

5'

3'

T         G      T         C    -   CGACCCGGACCAAGGCCCGAGTCACAGGTTTTTCCCGGGTCACTTGGTTTTGATCGGGTCACCCGGGTCAACCCCAATTTTTTTTATAAATCAAAACGACGTCGTTTTGGTTTTAAAAAATAAATAGTCAACGGGTTGCAA
 TTTAGAGCA AGTTTT AAACCCGGC TGGT GGT                                                                                                                                             
 ||||||||| |||||| ||||||||| |||| |||                                                                                                                                              
 AGATTTTGT TCAAAA TTTGGGCCG GCCG GCT                                                                                                                                             
G         A      T         A    G   GCACAGCTGAGCCCTGGGCCGACTGGGCCCTGACTTTGGCTCGGCCCAAATTCTTTTTTATTACCTTCAGTTTTTGGGCCCACTGGGCTGTTCAACTGGACCACTGGGTCAACTGGACCGTTCTGGGCCAGTTTTTGGTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3430005

TTTTAGAGCAGAGTTTTTAAACCCGGCCTGGTGGTCGACCCGGACCAAGGCCCGAGTCACAGGTTTTTCCCGGGTCACTTGGTTTTGATCGGGTCACCCGGGTCAACCCCAATTTTTTTTATAAATCAAAACGACGTCGTTTTGGTTTTAAAAAATAAATAGTCAACGGGTTGCAACCTGGTTTTTGACCGGGTCTTGCCAGGTCAACTGGGTCACCAGGTCAACTTGTCGGGTCACCCGGGTTTTTGACTTCCATTATTTTTTCTTAAACCCGGCTCGGTTTCAGTCCCGGGTCAGCCGGGTCCCGAGTCGACACGTCGGGCCGAGCCGGGTTTTAAAACTATGTTTTAGAG

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