SE3420008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8291
  • Populus trichocarpa
  • SE3420008
  • Mutator
  • M1
  • scaffold_261:2479-2766
  • TTTTTGTAG
  • AGGTTAAAGGCTTCTTTGCGTATCTGTACTCTTGATTTTATACTGTTTTGCCTCTGCTTTTATTTATTCTATTGTCAACTCTCTACATTCAAAATTGTCTTTGTTTCGCCCTTATTTGACCGGAAGTTCAGA

Secondary structure and sequence

TSD    TIR
5'



3'
 TTTTTGT    T        -CT   C  A   G             A     T     ---          A   A     T        C     A  C        CT      C C  T   T     G  --AG      TT
        AGGT AAAGGCTT   TTG GT TCT TACTCTTGATTTT TACTG TTTGC   CTCTGCTTTT TTT TTCTA TGTCAACT TCTAC TT AAAATTGT  TTGTTT G CC TAT TGACC GA    TTCAGA  
        |||| ||||||||   ||| || ||| ||||||||||||| ||||| |||||   |||||||||| ||| ||||| |||||||| ||||| || ||||||||  |||||| | || ||| ||||| ||    ||||||   
        TCCA TTTTCGAA   AAC CA GGA ATGAGAACTAAAA ATGAT AAACG   GAGATGAAAA AAA AAGAT GTAGTTGG AGATG AA TTTTAGCA  AACAAA C GG ATA ATTGG CT    AAGTCT  
ATGATTTT    T        CAT   -  A   G             C     C     AGG          A   C     T        A     A  T        TT      C A  C   C     A  ACTA      CG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End