SE3430010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8293
  • Populus trichocarpa
  • SE3430010
  • hAT
  • Hat8
  • scaffold_6:8376628-8376801
  • GCTGCTGA
  • CCAGGGGCGGAGACAGGGGGTGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTGCTGAAC            A  -------------     T     -        TGGGGCCCCTGCAAGAAAATTGTTTTTACAGCTCTCCC
          CCAGGGGCGGAG CA             GGGGG GGCAA GCAGGGGC                                      
          |||||||||||| ||             ||||| ||||| ||||||||                                       
          GGTCCCCGCCTC GT             TCCCC CCGTT TAAAGTCA                                      
   CCAAGTC            G  TTTCTATGTTAAT     -     C        ACATAATAATAAAATTGATTTTAATATATTTAATAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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