SE3420012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8295
  • Populus trichocarpa
  • SE3420012
  • Mutator
  • M2
  • scaffold_13:6631435-6631685
  • TAAGATTTA
  • TAAGATTTAGGAAAAATTACAAAAATGCTCCAATAATTTGATTTGAATTTCACTTTCTTTCTATTTTTTCATAAATTACACTCTACATCCTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A      AAA     C      G  C A   A                    C       T    C            CTA    C    TCAAACAAAAAA     --   AAA      ATT
TAAG TTTAGG   AATTA AAAAAT CT C ATA TTTGATTTGAATTTCACTTT TTTCTAT TTTT ATAAATTACACT   CATC TGTA            TTCAA  ATA   TACATT   
|||| ||||||   ||||| |||||| || | ||| |||||||||||||||||||| ||||||| |||| ||||||||||||   |||| ||||            |||||  |||   ||||||    
ATTT AAATCC   TTAAT TTTTTG GA G TAT AAACTAGACTTAAAGTGAAA AGAGATA GAAA TATTTAATGTGA   GTAG ATAT            AAGTT  TAT   ATGTAG   
    A      CTA     A      G  A A   C                    A       T    A            AAA    A    ---TAAATATAC     AT   CAA      GAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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