Plant MITE

SE3430013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8296
Populus trichocarpa
SE3430013
hAT
Hat1
scaffold_1:41430949-41431269
CATTTGAT
CATTTGATCATAGTTTTGAAACCCGGCCCGGCC

Secondary structure and sequence

TSD TIR

5'

3'

    TT  AT         G        C    -  ----     GGTCGACCCGGGACCCGACCAACCCGGGACTGGAACCGGACCGGGTTGATGAAAAAATAGAAAAAATCATGACCCGGTGTGACCCGGCCGACCCAGAGGGTTGACCCAGCAAAACCCGGT
  CA  TG  CATAGTTTT AAACCCGG CCGG CC    CGGCG                                                                                                                        
  ||  ||  ||||||||| |||||||| |||| ||    |||||                                                                                                                         
  GT  AC  GTATCAAAA TTTGGGCC GGCC GG    GGGCC                                                                                                                        
TA  TT  --         A        A    A  TTCC     CAAGGCCCAAAACTGGCCCAATGGCCCAAAACTGGCCCAGTCGGCCCAGTTAAAGATAAATTTTTTTTTAAGTTTTGCCACAACAAAATCATTTTTTTTTTGTTTTCAGTTGCCCAACGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3430013

CATTTGATCATAGTTTTGAAACCCGGCCCGGCCCGGCGGGTCGACCCGGGACCCGACCAACCCGGGACTGGAACCGGACCGGGTTGATGAAAAAATAGAAAAAATCATGACCCGGTGTGACCCGGCCGACCCAGAGGGTTGACCCAGCAAAACCCGGTTGCAACCCGTTGACTTTTGTTTTTTTTTTACTAAAACAACACCGTTTTGAATTTTTTTTTAAATAGAAATTGACCCGGCTGACCCGGTCAAAACCCGGTAACCCGGTCAAAACCCGGAACCCGGGCCTTGGACCGGACCGGGTTTAAAAACTATGCATTTGAT

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