SE3450014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8297
  • Populus trichocarpa
  • SE3450014
  • PIF/harbinger
  • To1
  • scaffold_1:2512945-2513160
  • TAA
  • AGAGCGTGTTTGGCAGTGTGGTTGCGGGTGCTTTTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             C             G   -        ----------TAAC    CA   C     ------------AC   TCAATGATGTTTTTTCATTTTTAAAAATTAT
  AGAGCGTGTTTGG AGTGTGGTTGCGG TGC TTTTCAAA              TTTT  TGC AAAAT              ATG                               
  ||||||||||||| ||||||||||||| ||| ||||||||              ||||  ||| |||||              |||                               T
  TCTCGTACAAACC TTGCGCCGACGCC ACG AAGGGTTT              AAAA  ACG TTTTA              TGC                               
AA             C             G   C        TTTAAACTTAAAAA    AA   A     AATTATACCAAACA   AAAACCTAGCAAAACTACACGACTACAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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