SE3430018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8301
  • Populus trichocarpa
  • SE3430018
  • hAT
  • Hat1
  • scaffold_8:1159727-1159992
  • ACCACTAC
  • CATAGTTTTTAGACCTGGCCCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACCACTAC         T             TCTAA    CGGGTTCCGGGTTTTGACTGGGTCACCGGATCGCCCGGGTCAATTTTTTTAATCAAAACGACGTCGTTTTAGTAAAAAAAAATAAAAGTCAATGG
        CATAGTTTT AGACCTGGCCCGA     GGCC                                                                                               
        ||||||||| |||||||||||||     ||||                                                                                               G
        GTATCAAAA TTTGGGCCGGGCT     GCCC                                                                                               
CATCACCA         C             -----    AGCTGGGCCCCCGACCTTGGCCCGGCCCAATTTCTTTTTTACCCCTTTCTTTTTTGAGCCACACTGGGCCGACTGGGCCGTTATGAACCAACGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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