SE3430026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8309
  • Populus trichocarpa
  • SE3430026
  • hAT
  • Hat4
  • scaffold_13:3848922-3849513
  • TTTAATGA
  • TTAATG

Secondary structure and sequence

TSD    TIR
5'



3'
T    T AATT                   -----  T       CAACCCGGTGGCTGGACCGGCCCGGGTTTAATAAAAGACCGGCTGTGGCAACAGCCCGGGCGAAAAAAATCATGTTTTTTTAATCAATGTGGGATTTGAAACCCATTAGTATATATACTCTATGTTCCAAGAAAAAAAAATCATGTTTTTTCAATGTGGGATAAAAAACTTTTTGGTTTAAATACTTCAACTTAAAAGGATAATATATTATCTTTTCAATGTGGGATTTGAAACCTTCTCATATGTATACTGTT
 TTAA G    GTTATTAAACCCGGCCCGG     CC GGTGGGT                                                                                                                                                                                                                                                              
 |||| |    |||||||||||||||||||     || |||||||                                                                                                                                                                                                                                                               
 AATT C    CAATAATTTGGGCTGGGCC     CT GGGCCGG                                                                                                                                                                                                                                                              
T    T GTAT                   CCCAA  -       TTCGTCGGCCCAGGGTCCAAAGTACCCAGTTGGACCTAATTGGGTCTTTTTAAATTTTTTTTTAATTTCAAAATTATAAAGTATACTTTTTTAGGTACATTTATATCTAATATGTATAATACTTCAAATTTTCTTATAAAATTTTTTTGTAAATAGGGTGTAATTTTTCTATAATACAATTCGAAAATTCAATTTCATAAATTTAATTTTAAAAAAAAATAGGGTGTAACTTTTTTGTCTTGAAAAAAGTACCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End