SE3430029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8312
  • Populus trichocarpa
  • SE3430029
  • hAT
  • Hat8
  • scaffold_1:44371353-44371534
  • GCTAGAAG
  • CTAGAAGCAGGGGCGGAGCCAGGGGGTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
  G    AAG            -------------       T   ----AA  T     TTGGGCCCCTGCAAAACATTTTAAAATTTTCTATTATTTAAT
   CTAG   CAGGGGCGGAGC             CAGGGGG GGT      GC GGGGC                                          
   ||||   ||||||||||||             ||||||| |||      || |||||                                          A
   GATC   GTCCCCGCCTCG             GTCCCCT CCG      AT TATAT                                          
GAA    --G            ATCCACGTAAAAT       -   GTTTTA  -     TATTATATATAATAATTTTTCGAATAAATAAATTTAATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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