Plant MITE

SE3450031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8314
Populus trichocarpa
SE3450031
PIF/harbinger
To3
scaffold_13:193194-193607
TTA
AGAGCATCTCCAATG

Secondary structure and sequence

TSD TIR

5'

3'

TT               CAAAAT    TT    AA       TTAAT     -    TTTTGAATAGTGTAAATATAGCTTTTTTTACTATATCTATTCCAATGGAAAAAAGCTATTTGAAGAGTCATTTATATTGGAGTGGAAGAAACAAGTGTATTATTATTTCTTAATAAATTTGATGTTATTTTTTTTTCCACATGTCTACATTT
  AGAGCATCTCCAATG      GCTA  TGGA  AGCTAAA     AAAAT AGCA                                                                                                                                                        
  |||||||||||||||      ||||  ||||  |||||||     ||||| ||||                                                                                                                                                        A
  TCTCGTAGAGGTTAC      CGGT  ACCT  TCGATTT     TTTTT GATT                                                                                                                                                        
AT               -CTCTT    TT    -A       --TTA     T    ATAAAATCTAAAAGAAACGAACAAAACGTGTGAGGTTCCCTTTTCGGTTTGTTTTACGATTTTACCGAAAAGAGAGGGTGTTTACGATAAGGATGTATAGAGAAGTTTCTCAGTTTTGGTTGTTTCACCTCGGTGATTTTTTTATTTGATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3450031

TTAGAGCATCTCCAATGCAAAATGCTATTTGGAAAAGCTAAATTAATAAAATAGCATTTTGAATAGTGTAAATATAGCTTTTTTTACTATATCTATTCCAATGGAAAAAAGCTATTTGAAGAGTCATTTATATTGGAGTGGAAGAAACAAGTGTATTATTATTTCTTAATAAATTTGATGTTATTTTTTTTTCCACATGTCTACATTTAATTAGTTTATTTTTTTAGTGGCTCCACTTTGTTGGTTTTGACTCTTTGAAGAGATATGTAGGAATAGCATTTGTGGGAGAGAAAAGCCATTTTAGCATTTTGTTTGGCTTTTCCCTTGGAGTGTGCAAAACAAGCAAAGAAAATCTAAAATATTAGTTTTTTATTTTTAGCTATCCATTTGGCTTCTCCATTGGAGATGCTCTTA

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