SE3430032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8315
  • Populus trichocarpa
  • SE3430032
  • hAT
  • Hat8
  • scaffold_2:15576241-15576410
  • CGTATATG
  • CGTATATGCAGGGACGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
             A     CCAAAA       -   --   GGGGCAAGATTTTAATTGTATTATTATTTTAGCTAAAATTATATAAAT
CGTATATGCAGGG CGGAG      GATACAA TTA  AAA                                                
||||||||||||| |||||      ||||||| |||  |||                                                T
GTATATGCGTCCC GCCTC      TGTCCCC ACC  TCG                                                
             C     ------       C   GT   TCCCGGGGTCGGGGACGTTCTTTTAACAAAAAGGTCGAAAGGGAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3