SE3430033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8316
  • Populus trichocarpa
  • SE3430033
  • hAT
  • Hat9
  • scaffold_16:3263112-3263285
  • CGTCTCAG
  • GCAGTGGCGGAGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CGTCTCA    T       G  ----------------  GGGAGGCTGGCAGGGGCCCGGGCCCCTGCAAGGAAATTTTTCCCAGCCTCCCCCC
       GCAG GGCGGAG CA                GG                                                       
       |||| ||||||| ||                ||                                                       T
       CGTC CCGCCTC GT                CC                                                       
GACTCTG    T       -  TCTTCTTTTTTTCATT  CCCCGGTTTAATTTTCTTTATAAAATTTTTTTAATTTTAAAATTTATAAAATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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