Plant MITE

SE3430034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8317
Populus trichocarpa
SE3430034
hAT
Hat14
scaffold_2:21147036-21147206
GTAGTAGC
GCCAGGGGCGGAG

Secondary structure and sequence

TSD TIR

5'

3'

GTAGTA     G       CAAGACAAAAAAATT         CAAATTATA        GGATCAAATTTTTTTTTAATTATTTCTATTAAATA
      GCCAG GGCGGAG               AGGAGGGGT         AATTAGAG                                   
      ||||| |||||||               |||||||||         ||||||||                                   T
      TGGTC CCGCCTC               TCCTCCCCA         CGTCCCCG                                   
CGATGA     A       -------------CC         -------AC        GGGCTGGGGACGTTTCTTTACGGGGAGGGAACATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3430034

GTAGTAGCCAGGGGCGGAGCAAGACAAAAAAATTAGGAGGGGTCAAATTATAAATTAGAGGGATCAAATTTTTTTTTAATTATTTCTATTAAATATTTACAAGGGAGGGGCATTTCTTTGCAGGGGTCGGGGCCCCTGCCAACCCCTCCTCCCTCCGCCACTGGTAGTAGC

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