SE3450035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8318
  • Populus trichocarpa
  • SE3450035
  • PIF/harbinger
  • To6
  • scaffold_1:33465014-33465156
  • GAA
  • GGGTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAGA  -       AATGGG   T -  TTGTGCTTTTTGAGTAAAAAACATGTTTTTATAGCTTTTAGAGGTGT
     GG GTGTTTG      AGA A GC                                               
     || |||||||      ||| | ||                                               G
     CC CACAAAC      CGA A CT                                               
 AAGC  A       ------   - C  CCACACCACCGAAAAACAGTTTCCATGTTATGGAAAATTTGTGTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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