Plant MITE

SE3820001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8319
Solanum tuberosum
SE3820001
Mutator
M1
chr12:39285465-39286014
AGATCTAAT
AGAT

Secondary structure and sequence

TSD TIR

5'

3'

        CTAA       AAC       TTACAC         TCAAATAT   A --   TACATATATATTAAAAATAGTACTTATCTTATCACTAATTAAGAGTTTTCTACGATATATTGAGGAAGATACACTTAAAATACATATACTTTTACTATCAGATATAATGAAATAGGGAGAGAGACGAGCGAGATTTGTTACGTGTCCAGATACATGTAAATCACACTAGATACATGTATATGTACGTATCTGGTGTGATTCATATGTATCTGAGATATATACC
    AGAT    TAGGAAA   TACATAA      ATTTCACTA        TCT T  TAT                                                                                                                                                                                                                               
    ||||    |||||||   |||||||      |||||||||        ||| |  |||                                                                                                                                                                                                                                
    TCTA    ATCCTTT   ATGTGTT      TAGGGTGAT        CTC G  TAG                                                                                                                                                                                                                               
ATAA    ----       -GA       ------         --CAAATC   - AT   TGAATCTATGTGAGATCAAACGTTATAATGCATAGAATGGTCTAAAACCACACTGTGTTTATGCAAGTTTATGTACATAACCCTATGTACTCCAATTTTAACCCACATTAAGCAAGATCTATGTAACATAGGTTCACCTAAGCGTACATATACCTTATGTATTGTTTAGAGGTGGCGGAGGGAGCGGAGAGAGGGTAGAGCGAGCGGTGAGTGGATACATAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820001

AGATCTAATAGGAAAAACTACATAATTACACATTTCACTATCAAATATTCTATTATTACATATATATTAAAAATAGTACTTATCTTATCACTAATTAAGAGTTTTCTACGATATATTGAGGAAGATACACTTAAAATACATATACTTTTACTATCAGATATAATGAAATAGGGAGAGAGACGAGCGAGATTTGTTACGTGTCCAGATACATGTAAATCACACTAGATACATGTATATGTACGTATCTGGTGTGATTCATATGTATCTGAGATATATACCAGATACATAGGTGAGTGGCGAGCGAGATGGGAGAGAGGCGAGGGAGGCGGTGGAGATTTGTTATGTATTCCATATACATGCGAATCCACTTGGATACAATGTATCTAGAACGAATTACACCCAATTTTAACCTCATGTATCCCAATACATGTATTTGAACGTATTTGTGTCACACCAAAATCTGGTAAGATACGTAATATTGCAAACTAGAGTGTATCTAAGTGATTAGCTCCTAAACTAGTGGGATTTGTGTAAGTTTCCTAATCTAATA

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