Plant MITE

SE3820003

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8321
Solanum tuberosum
SE3820003
Mutator
M3
chr03:20243602-20243950
TTAATTAAA
TTAATTAAAGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGGTATGCAAATATCCTCCGTCATATTTTTGGGATATTGGTGCCCCTGCCGTTCAAAAACTAAAGCATATATACCCTTTATACTAACGGACATACACTTGTCATAATCTTATCCACAGTTCCGAT

Secondary structure and sequence

TSD TIR

5'

3'

         A           C         C C   C                                                  G                    A         A        A        ----------CAT    T  TCA           ACA  TC    AT
 TTAATTAA GGGAAAAAGGA AAATATACC C GAA TATCGTAAATGGTATGCAAATATCCTCCGTCATATTTTTGGGATATTGGT CCCCTGCCGTTCAAAAACTA AGCATATAT CCCTTTAT CTAACGGA             ACAC TG   TAATCTTATCC   GT  CGAT  
 |||||||| ||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||||             |||| ||   |||||||||||   ||  ||||   
 AATTAATT CCCTTTTTCCT TTTATATGG G CTT ATAGCATTTACCATACGTTTATAGGAGGTAGTATGAAAACCCTGTAGCCA GGGGACGGCAGGTTTTTGAT TCGTATATA GGGAAGTG GATTGCCT             TGTG AC   GTTAGAATAGG   CA  GCTA  
A        -           A         A A   A                                                  G                    C         C        A        TCTGATTTATCCC    C  --C           ---  --    TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820003

TTAATTAAAGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGGTATGCAAATATCCTCCGTCATATTTTTGGGATATTGGTGCCCCTGCCGTTCAAAAACTAAAGCATATATACCCTTTATACTAACGGACATACACTTGTCATAATCTTATCCACAGTTCCGATATTTATCGACGGATAAGATTGCCACGTGTCCCTATTTAGTCTTCCGTTAGAGTGAAGGGCATATATGCTCTAGTTTTTGGACGGCAGGGGGACCGATGTCCCAAAAGTATGATGGAGGATATTTGCATACCATTTACGATAATTCAGAGGTATATTTATCCTTTTTCCCTTAATTAAA

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