Plant MITE

SE3820008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8326
Solanum tuberosum
SE3820008
Mutator
M5
chr10:47850951-47851362
AATTCTTTG
TTGG

Secondary structure and sequence

TSD TIR

5'

3'

AATTCT    TATAAT    ATAAA    - TAGTGTTAGGAGCTAATTGCATTATTTCCCTACTATTTTTCAAAATTTATGGATTTCGGATACATCACTAAACTTTCGGATACATCAACAAACTTCCGGATACATTGGGGAGGGAGATCCGAGAGGGCAGGGATGTATCAAAGAGGGAATAGGACATCCGGATACATAGGGTAGGAAT
      TTGG      TTAC     TCCT A                                                                                                                                                                                  
      ||||      ||||     |||| |                                                                                                                                                                                  G
      AACC      AATG     GATT A                                                                                                                                                                                  
TTACTT    -TTTTT    -----    T TGTGTAGAATAAAATGGTATTAGAGATTTTTTTTAATAGTAAATTTAAAAAAAGTTTTTAGGGGAAAACCTATGTAGTAAGATGAGAGTGACTATGTAGGGATAGAGGGAGAGTCTATGTAGTGAGTGGAGAGACTATGTAGGGAAGAGAGAGCCTATGTAGGGAGGGGAGAGCCTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820008

AATTCTTTGGTATAATTTACATAAATCCTATAGTGTTAGGAGCTAATTGCATTATTTCCCTACTATTTTTCAAAATTTATGGATTTCGGATACATCACTAAACTTTCGGATACATCAACAAACTTCCGGATACATTGGGGAGGGAGATCCGAGAGGGCAGGGATGTATCAAAGAGGGAATAGGACATCCGGATACATAGGGTAGGAATGTATCCGAGAGGGGAGGGATGTATCCGAGAGAGAAGGGATGTATCAGAGAGGTGAGTGATGTATCTGAGAGGGAGATAGGGATGTATCAGTGAGAGTAGAATGATGTATCCAAAAGGGGATTTTTGAAAAAAATTTAAATGATAATTTTTTTTAGAGATTATGGTAAAATAAGATGTGTATTTAGGTAATTTTTCCAATTCATT

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