SE3850016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8334
  • Solanum tuberosum
  • SE3850016
  • PIF/harbinger
  • To3
  • chr01:78665687-78666126
  • TAA
  • ACACCTTGTTTGGATAGTTGTTATCCGTTCTATTATATTGTATTGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA    C          A       TC   ------------TC                ---T         ACAATGTTTATTTTGATTGTTATTTAAATTCTATTGTATCATATCGTTTAAATTCATCGTTAGGTAACAACAAAAAGACCTATTTTATGTAACGACCGATTTGGAGTGATCGCGTCATTACTTGGTATTTTCTTCTCATTTCTCTTTATTTATTA
  ACAC TTGTTTGGAT GTTGTTA  CGT              TATTATATTGTATTGT    AATTTAAAT                                                                                                                                                           
  |||| |||||||||| |||||||  |||              ||||||||||||||||    |||||||||                                                                                                                                                           T
  TGTG AACAAACCTA CAATAAT  GCA              ATAATATAACATAACA    GTGACATAA                                                                                                                                                           
AA    A          C       --   TAACAAAGTATTAT                TAAC         CTTAATTTCTTATGTTACAAAACTATCTAATTAATAAAAAGCAACAATGTATTACAGTATGCAGATATTAAACTTATTATTTGGATGATTTTTCCGTCCCATGCTCTATCTCCATGAAACTTTTCTATCCTATTTTCTACTTTATACTATTCATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End