SE3820020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8338
  • Solanum tuberosum
  • SE3820020
  • Mutator
  • M12
  • chr10:2215363-2215776
  • AAAATATAT
  • GGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAAATATAT     -AA     TGGTTAAACAAACATATACTAGTTAATTAGTCATCATAGCTATAGGTTTAGTTAATTATCACTCCTGATCAACATTCAGTGATAATTATCGGGTTTCGATTTTGTATAATTCGCACGTTTGTATAATTCGAAATTTGTATAACTTTTGTATAATGTTATTTATATAACAGTTTAAAGTTCAGGTG
          GGGAA   TTACG                                                                                                                                                                                         
          |||||   |||||                                                                                                                                                                                          
          CCCTT   AACAT                                                                                                                                                                                         
TATAAAAAAC     AAA     TTATCTGTGTTATTATTTGAATTAATACGAGATATCGCTATCAAACGTATAAATGCCCGACATCGATGTTAAATTATACAGAGTAAACATATTAATCGACCACTCAAACACATTAAGTGCCCATACAAACATATTAACTCGATAAAAATATATTTGAGCTTTATTGATTAAATATGTTTATGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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