SE3830023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8341
  • Solanum tuberosum
  • SE3830023
  • hAT
  • Hat3
  • chr07:51109319-51109512
  • TAGTCAGC
  • CAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGTCAGC              ----------      -  AGTAAGGGAGTTCAAAATCTAAAAAAATAGACACACGAAGTAGTCGAAGGGGGTTCGACAT
        CAGTGGCGGAGCCA          GGATTT TT                                                             
        ||||||||||||||          |||||| ||                                                             C
        GTCACCGCCTCGGT          TCCCCC AG                                                             
GGACTGAT              GGAATGTTAC      C  CAAGCCGCCTTTTAATATACTAAATATGTACTAATTTTATTAAAAAATCCATATATATCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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