SE3820026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8344
  • Solanum tuberosum
  • SE3820026
  • Mutator
  • M14
  • chr08:4138994-4139351
  • TATTTTGTA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTT      --     TACT  AATACACGTCTTATATTTTTCTTATTTCCAATATCCCCTTCTATTTCTAAAAACCTCTAAAATCCCTTATTTCTTTAATGTATCTGAGCTACATATTAATGTATCCGACCCAGTATTTAATGTATCCGAGCTACATATTATGTATCCGGTTTATTTTATG
      GTAGGA  AAAAT    GA                                                                                                                                                                
      ||||||  |||||    ||                                                                                                                                                                 
      ATGTTT  TCCCA    TT                                                                                                                                                                
            TA     ----  TAAAATCCTTAGTGTATCAAAATTATACTTTAATATTAAATAGGGAGAAATCAAACATTAATATAATTAGGGAATTTTTCATTGTGTTTAACCTATGTATTATATATCGAGCCTATGTAATTTTTGATCGAGCTTATGTATTATACATCGAGCCTATGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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