SE3820032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8350
  • Solanum tuberosum
  • SE3820032
  • Mutator
  • M12
  • chr09:46045103-46045626
  • TATTTTCCT
  • GGGAAAATTACGCG

Secondary structure and sequence

TSD    TIR
5'



3'
 TATTTTCCT     AA  A    GTTA   AA     -TAC  -           A           A    CT        CACTCAC   -- AACATTATACATT -- TTATGCAGGCTGACTTTGAGTTTGTATAATTTGCCACGTTTGTATATGTATAATTCGCCAGAATATACAAATACATATGTACAATATACAATTATCTAACCTATATACATATACAACTCACCTCTCTCCCACTCTCTGCCCTCTCTCGCTCGCCTCTCTCCTC
          GGGAA  TT CGCG    AGC  ACTTA    TA CTTAATTACTC TCATAGCTATA TTTG  ATAATTAT       GAC  T             A  A                                                                                                                                                                   
          |||||  || ||||    |||  |||||    || ||||||||||| ||||||||||| ||||  ||||||||       |||  |             |  |                                                                                                                                                                   C
          CCCTT  AA GTGT    TCG  TGAGT    AT GGATTAATGAG GGTATCGATAT AAAC  TATTAATG       AGC  C             G  G                                                                                                                                                                   
TTCTTTTATC     GA  -    -ATA   -G     TTTT  C           A           C    --        ----TTA   AT ------------- AT TACAATATACCTCCTCTCTCCGCTCGCTCTGACCCTCTCTCTCCTCTCTCCGCTCTCTCTCCCCCGTTTCTCACCCTCTTTCCACTTAACATATACATATATCCAATCTATTAACATATAATATGTATACATAAACATATATACCATTCGTTCTAACCCTCTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End