SE3840034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8352
  • Solanum tuberosum
  • SE3840034
  • CACTA
  • Ca1
  • chr09:47397479-47397703
  • TAA
  • ACACTACATCAAAAATTATCATTAGCGGCAATTAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        T       T  CA           T   TAACC   ----------ATA   T     C    -   TATGTATTTTTAGCGACAATTAGCACTCTTTGTATATGTCCC
  ACACTACA CAAAAAT AT  TTAGCGGCAAT AAT     GCA             GCT AATTG CGCT AAA                                          
  |||||||| ||||||| ||  ||||||||||| |||     |||             ||| ||||| |||| |||                                          T
  TGTGATGT GTTTTTA TA  AATCGCCGTTA TTA     TGT             GAT TTCAG AAAT GCT                                          
AA        T       T  AA           T   -TATC   AATTATTTCTCAC   -     -    G   GTGATCAATTCATGGTAATCTTGGTTACAGCGATTTCTGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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