SE3830035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8353
  • Solanum tuberosum
  • SE3830035
  • hAT
  • Hat3
  • chr05:4525210-4525414
  • ACAACAAT
  • TCAGTGGCGGAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ACAACAA               GGATTTT  ATA          AA    GAAAAAATAGACACACGAAGTAGCTGAAGGGGGTTCGACATCTACTATATATAC
       TCAGTGGCGGAGCTA       CA   AAGGGGTTCA  ATTT                                                      
       |||||||||||||||       ||   ||||||||||  ||||                                                       
       AGTCACCGCCTCGGT       GT   TTCCCCAAGT  GGCT                                                      
TAACAAC               --GGAAT  GCA          -A    TGGGAGAAGCCGCTTTTTAATATAATAAATATGTACCAATTTTATTAAAAAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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