SE3820037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8355
  • Solanum tuberosum
  • SE3820037
  • Mutator
  • M18
  • chr06:32470454-32470866
  • TTAAATCTA
  • AGGGAAACTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAATCT            --  AAATATACAACATTAAAAAAATATTTATCATTTATAGCAATAACATTTTTTTCCCATTTGATCACTTTTTAATACATTTATAATACAATTTTAATACATATTACAAAGAATAATTTATTATTCACATATAATACAAGTTTTATTGATAGATAATACATTTATCACATATTTTAATACACTTAT
        AGGGAAACTTAC  AT                                                                                                                                                                                       
        ||||||||||||  ||                                                                                                                                                                                       A
        TCCTTTTGAATG  CC                                                                                                                                                                                       
ATCTAAAT            AA  TACCCATGGAAAACTATTTATTAATAACTAAAATCGCTATAAAAAATAAATAATTGTAAAAATCGTTATGATACAATTTAGACATTATACATAATTTTCACTTAATACATATGTTATATATACATAATATTAACAAAAAAAATTATATAATACGAACAAACCATTCTTTAACTGTGTAACATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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