Plant MITE

SE3850048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8366
Solanum tuberosum
SE3850048
PIF/harbinger
To2
chr04:1689954-1690190
TTA
AGAGCCCGTTTGGATTGGCTTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT      C                 AA   - A CTTTTAAGTCAAAAAAATAAAAAGTCAAACTTAAATGATTTTTTAAGTCAAAAAATAAAAAGTAGGGGGAGACCTACTTTTGATT
  AGAGCC GTTTGGATTGGCTTAAA  AAG T G                                                                                     
  |||||| |||||||||||||||||  ||| | |                                                                                     T
  TCTCGG CAAACCTAACTGAATTT  TCA C C                                                                                     
AT      A                 --   A - AGTTGGGATGGACATTCAGTAAAAATTGAAAATTTTCACAAACCGTTCTAATTTTTATTGAATTTTTACTGAAATTTTTTCAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850048

TTAGAGCCCGTTTGGATTGGCTTAAAAAAAGTAGCTTTTAAGTCAAAAAAATAAAAAGTCAAACTTAAATGATTTTTTAAGTCAAAAAATAAAAAGTAGGGGGAGACCTACTTTTGATTTTTAACTTTTTTAAAGTCATTTTTAAGTTATTTTTAATCTTGCCAAACACTTTTAAAAGTTAAAAATGACTTACAGGTAGGGTTGACCAACTTTTAAGTCAATCCAAACAGGCTCTTA

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