Plant MITE

SE3810049

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8367
Solanum tuberosum
SE3810049
Tc1/Mariner
St2
chr12:39558799-39559039
TA
TACTCCCTCTGTCCCAATTTATATGACTT

Secondary structure and sequence

TSD TIR

5'

3'

                A     ----------A      ATTTTCCTTTCTA    A  CCAAAAGAATGACACATTTCTATATTAAGTAACAATTTAACTTTAAAATATTCATTTTACCCTTACTGAAAT
TACTCCCTCTGTCCCA TTTAT           TGACTT             GTCA TC                                                                        
|||||||||||||||| |||||           ||||||             |||| ||                                                                        G
ATGAGGGAGACAGGGT AAATA           ACTGAG             GTGT TT                                                                        
                A     CAATCCATCAA      -----------CC    -  CAAATTCTTCTTTCTTTCTGAAAATTTCGAACACCAGATTTTACTTACTATATTTAAAAACACCGATATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810049

TACTCCCTCTGTCCCAATTTATATGACTTATTTTCCTTTCTAGTCAATCCCAAAAGAATGACACATTTCTATATTAAGTAACAATTTAACTTTAAAATATTCATTTTACCCTTACTGAAATGATTTATAGCCACAAAAATTTATATCATTCATTTTAGACCACAAGCTTTAAAAGTCTTTCTTTCTTCTTAAACTTTGTGCCGAGTCAAACTACCTAACATAAAATGGGACAGAGGGAGTA

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