SE3830050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8368
  • Solanum tuberosum
  • SE3830050
  • hAT
  • Hat9
  • chr05:28504937-28505519
  • AATTAGAC
  • TAGGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTAGAC        CGTATC   CGGTTCGGTTTTGAAGTTTATCGGTTTGGCTTATTGTTTATCGGTTTGTAGAGATGCTAAACCGTTATCGAACCATTAAGATATTGGCTTATCGATTATTGGTTTATCGGTTTTTGATCGTTATCGGTTCGGTTATCGGTTTAACGGTTAAGATTTGACACAAAAAAAACATTGAAAATCACTTAGAAATAAGGTGACAAACCAAATGAACCATGCACATGACTTCTCAAGTTACATCTTGCTCAAAAGTAAATATTTTTACATTGTAG
        TAGGGTTG      GGT                                                                                                                                                                                                                                                                             
        ||||||||      |||                                                                                                                                                                                                                                                                              
        ATCCCAAC      AGT                                                                                                                                                                                                                                                                             
CAGATTAA        -----A   TTTGACTTAGCTTTGGCTATTGAGCTTGGTTTTTTTACAATAACCAAATAGTCATAACCCAATAACCAAATCGCCAAAACTATTGCCAAAACTAAAAAATAGAATAGCCCAATAGTCAAGAATTGCCAAACTTCCAAAAAGAATTGCCCAATTGGCTATTGGGCTATCATTTAATTTATTAATATAAATATGGTAAAACATATATTTCAGGAACTGAATATCAAATCAAAGGATGAAAATAAAAAACAACAAAGTTTTTGAACCAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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