Plant MITE

SE3810051

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8369
Solanum tuberosum
SE3810051
Tc1/Mariner
St9
chr12:58694295-58694584
TA
TACTCCCTCCGCCCCATATTAGATGGGCATCTTACTA

Secondary structure and sequence

TSD TIR

5'

3'

         CGC         G       T   A   AAAATATTTGTCTCATATTA     TCACTTACTAAATCAAGATAGAATTAATTAATTTTTTCCCATTTTACCCCTACAATTAATATGGCCTTTGAAAGTTTAAACAAATTTT
TACTCCCTC   CCCATATTA ATGGGCA CTT CTA                    CTTGA                                                                                        
|||||||||   ||||||||| ||||||| ||| |||                    |||||                                                                                        G
ATGAGGGAG   GGGTATAAT TACCTGT GAA GAT                    ACTAA                                                                                        
         ATA         A       -   A   ----------AAAATGTGCC     TTCTTTAGTAATTATCTAACTAGTTGAAATGATAAAAAGGGAAGCAAGTATAATTATACGGAGAACTTTTTTCTTTAAGAACCCAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810051

TACTCCCTCCGCCCCATATTAGATGGGCATCTTACTAAAAATATTTGTCTCATATTACTTGATCACTTACTAAATCAAGATAGAATTAATTAATTTTTTCCCATTTTACCCCTACAATTAATATGGCCTTTGAAAGTTTAAACAAATTTTGAAGACCCAAGAATTTCTTTTTTCAAGAGGCATATTAATATGAACGAAGGGAAAAATAGTAAAGTTGATCAATCTATTAATGATTTCTTAATCACCGTGTAAAATAGAAAGTGTCCATATAATATGGGATAGAGGGAGTA

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