SE3820054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8372
  • Solanum tuberosum
  • SE3820054
  • Mutator
  • M4
  • chr12:61938818-61939046
  • ATAATTGCA
  • TGCAGGGAAGTGCTAAATGGCCAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAT    -----      TG  AAA        AAATTTAGTTA              AATTAAAAA    ATAATATTATTTTTATTTAAAAATAAATTGATCTTTTTTCCATTTTTTAGTTAAAA
     TGCA     GGGAAG  CT   TGGCCAGA           GAATTTGGTCAGAA         TACT                                                        
     ||||     ||||||  ||   ||||||||           ||||||||||||||         ||||                                                         
     ACGT     CCTTTT  GA   ACCGGTCT           TTTAAACTAGTCTT         CTAT                                                        
         TAATA      TA  AAA        -----------              --------A    GAAATAGATACAATAAAATGGAAAAATTAGTAAAAATGAGAAAATTAAAATTATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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