SE3830060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8378
  • Solanum tuberosum
  • SE3830060
  • hAT
  • Hat13
  • chr02:45587284-45587564
  • GCCAAAAA
  • CAGAGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCAAAAA    G       CAAGATTA        A   CTAAATT    TTTTTTAAAAAAAGAAAGAAAGAGAGGGGTTCAAACCCACAACTCTAGTGTGAAAAACATTTCCATGGTCCCTTCCTTACCATTGAACCGTCAAT
        CAGA GCGGAGC        AGAGTTTG GTT       TCCC                                                                                               
        |||| |||||||        |||||||| |||       ||||                                                                                                
        GTCT CGCCTCG        CCCCAAGT ACC       CAAG                                                                                               
AAAAACCG    G       ---ATCCA        -   -------    CTTGCTTGGGTCGTCGAAAAGACATCTAGAATATAAATATAATCTTTTAATTTATTTATATATACATATAATTGAACACTTGGGGATTTCTTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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