Plant MITE

SE3820061

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8379
Solanum tuberosum
SE3820061
Mutator
M22
chr09:3484433-3484842
TATATTTTA
G

Secondary structure and sequence

TSD TIR

5'

3'

 TATATTTTA     -  ----    AAA   ------  CAACAATTTAGGTGCTAATTATATCTTATCCTGGAAGTTTTTCAAATTACAATAATTTCGGATTTTTTAGAACTCACGGATATATTGCTCTTTCACCTGATACATAGCAAACGATATATAAGTTATGTATCATATACATAACTATAAATAGGGTTCATATTGATTTAGGTTT
          GTATA AA    GTAC   AAA      TT                                                                                                                                                                            
          ||||| ||    ||||   |||      ||                                                                                                                                                                            G
          CCTTT AA    TTAA   TGT      AT                                                                                                                                                                            
ATTTTATATC     T  TACA    ---   GCTAAA  CTATTATATTAGATATTTTTAAATATAGTAAACTTAATTAATGTTAAAAAAAAAAGAAAAAAGAGAATTATAAGCCTATGTAGTGAGGTGGAGATAGTCTATTTAATGTTGAAACAAACACGTGTTACATAAAACATGTTTACAATAACAACTATGTATTGGGGTTAATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820061

TATATTTTAGTATAAAGTACAAAAAATTCAACAATTTAGGTGCTAATTATATCTTATCCTGGAAGTTTTTCAAATTACAATAATTTCGGATTTTTTAGAACTCACGGATATATTGCTCTTTCACCTGATACATAGCAAACGATATATAAGTTATGTATCATATACATAACTATAAATAGGGTTCATATTGATTTAGGTTTGAAATAATTGGGGTTATGTATCAACAATAACATTTGTACAAAATACATTGTGCACAAACAAAGTTGTAATTTATCTGATAGAGGTGGAGTGATGTATCCGAATATTAAGAGAAAAAAGAAAAAAAAAATTGTAATTAATTCAAATGATATAAATTTTTATAGATTATATTATCTAAAATCGTGTAATTACATAATTTTCCCTATATTTTA

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