SE3810068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8386
  • Solanum tuberosum
  • SE3810068
  • Tc1/Mariner
  • St9
  • chr03:10902080-10902346
  • TA
  • TACTCCCTCTATCCCATATTAGTTGATCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
    C     A   C                AT    AAAATAGTTGTTTCATATTAGTTGATCACCTTACTAAATCAAGAAAACATTAATTAATTTTTTTCATAAATTACCCTTGCAAATAATTCTTTTTAAAA
TACT CCTCT TCC ATATTAGTTGATCATT  ACTA                                                                                                  
|||| ||||| ||| ||||||||||||||||  ||||                                                                                                   
ATGA GGAGA AGG TATAATCAACTAGTAA  AAGG                                                                                                  
    A     C   -                --    TAAAACGTGCTATGAATTCTTTAGTATTTATGCTTCTATTTAAATGACTAAGTGGGTAATTTTTTGAACAACCTTTAAAATGTTTGTTTATACTTGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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