Plant MITE

SE3830071

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8389
Solanum tuberosum
SE3830071
hAT
Hat6
chr03:42751145-42751457
TTCATAAG
AGCAGTGGCGGATGTA

Secondary structure and sequence

TSD TIR

5'

3'

TTCATA     T       G  ------  A    AA   T   G   ---  C   -----    - GCG   ----  AAAAATATAAAAAAG  A  TTAACAGTGAGATTCAAACCCGGGCTTAACAACACTTAAACAACCTTAAGCACACACACCAAGAGCCAATGGATCAGC
      AGCAG GGCGGAT TA      GG TTCT  GGT GTG GTG   CT TGA     AAGT G   GAG    TC               AC TG                                                                              
      ||||| ||||||| ||      || ||||  ||| ||| |||   || |||     |||| |   |||    ||               || ||                                                                              A
      TTGTC CCGCCTG GT      CA GGTG  GCC CAC GAG   AT GGG     GGAG A   GAG    AT               AT GT                                                                              
GAATAC     C       G  GTATCT  -    --   -   -   CTC  -   TAATT    C ---   CCTT  ---------------  -  ATATATATATATATATATCCATCTTTACTTCTCCATAAATATATTTTAATTGTATCTCGTGGGTTACTTGTTTACTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830071

TTCATAAGCAGTGGCGGATGTAGGATTCTAAGGTTGTGGGTGCTCTGAAAGTGGCGGAGTCAAAAATATAAAAAAGACATGTTAACAGTGAGATTCAAACCCGGGCTTAACAACACTTAAACAACCTTAAGCACACACACCAAGAGCCAATGGATCAGCAGATCATTTGTTCATTGGGTGCTCTATGTTAATTTTATATAAATACCTCTTCATTTCTACCTATATATATATATATATATGTATATTCCGAGACGAGGTTAATGGGTACTCGAGCACCCGGTGGACTCTATGTGGGTCCGCCCCTGTTCATAAG

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