Plant MITE

SE3830072

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8390
Solanum tuberosum
SE3830072
hAT
Hat17
chr03:18761473-18762018
CCCACAGT
GTCAGTGGCGGATCTATGAAGGGCTGTGGAGGTGCCA

Secondary structure and sequence

TSD TIR

5'

3'

 CCCACA T              T  ---    -      AG      CGCCACCC   AACTTCGACGGAAACTCTATATATACATAGGTATATATATATAATATTTATATAAATATAAAGCGTGTCACCCACAGAACAAAACTGGCTTGTGGTGCCACGGTAGGAGGACAACTTTAGAAGGCTGATGTTGCGGGATTCGAATCCCATTTGTACCTATTTTTTTGAGAAATTTGCTGCATACGTTTTTTAAGAAAAAAAAAAGGCTTCAAGCACGTTT
       G CAGTGGCGGATCTA GA   AGGG CTGTGG  GTGCCA        CCG                                                                                                                                                                                                                            
       | |||||||||||||| ||   |||| ||||||  ||||||        |||                                                                                                                                                                                                                             
       C GTCACCGCCTAGGT CT   TCTC GACACC  CACGGT        CTG                                                                                                                                                                                                                            
TGACACC -              C  AAA    A      --      ----TTAT   AATAGCTAATTTAATTAAAATATAAACTAACTTAATAAGCAGAAAAGCTATATATAGTATTTAGTTAGTTATTTTATATTTATTATTCTATAAAGTGAAAATAACTCATAAATTAGTTTATTTTCTTTTCAGTTTCCTCATTATTACATTAATTAAATTAAATTCAGTTATTGTTAATATTTTTTATTTATTTTAACACGGTCGACAAAAAGGAATTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830072

CCCACAGTCAGTGGCGGATCTATGAAGGGCTGTGGAGGTGCCACGCCACCCCCGAACTTCGACGGAAACTCTATATATACATAGGTATATATATATAATATTTATATAAATATAAAGCGTGTCACCCACAGAACAAAACTGGCTTGTGGTGCCACGGTAGGAGGACAACTTTAGAAGGCTGATGTTGCGGGATTCGAATCCCATTTGTACCTATTTTTTTGAGAAATTTGCTGCATACGTTTTTTAAGAAAAAAAAAAGGCTTCAAGCACGTTTTTTTTAAGGAAAAACAGCTGGCACAATTTTATTTATTTTTTATAATTGTTATTGACTTAAATTAAATTAATTACATTATTACTCCTTTGACTTTTCTTTTATTTGATTAAATACTCAATAAAAGTGAAATATCTTATTATTTATATTTTATTGATTGATTTATGATATATATCGAAAAGACGAATAATTCAATCAAATATAAAATTAATTTAATCGATAAGTCTATTTGGCACCCACAGACTCTAAATCCTGGATCCGCCACTGCCCACAGT

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